//genesis // kkit Version 8 flat dumpfile // Saved on Wed Mar 14 22:17:24 2001 include kkit {argv 1} FASTDT = 0.01 SIMDT = 0.01 CONTROLDT = 5 PLOTDT = 1 MAXTIME = 2000 TRANSIENT_TIME = 2 VARIABLE_DT_FLAG = 0 DEFAULT_VOL = 1.6667e-21 setfield /file/modpath value /home2/bhalla/scripts/modules kparms //genesis initdump -version 3 -ignoreorphans 1 simobjdump table input output alloced step_mode stepsize x y z simobjdump xtree path script namemode sizescale simobjdump xcoredraw xmin xmax ymin ymax simobjdump xtext editable simobjdump xgraph xmin xmax ymin ymax overlay simobjdump xplot pixflags script fg ysquish do_slope wy simobjdump group notes xtree_fg_req xtree_textfg_req plotfield expanded \ movealone link savename file version md5sum mod_save_flag x y z simobjdump kpool CoTotal CoInit Co CoRemaining n nInit nTotal nMin vol \ slave_enable notes xtree_fg_req xtree_textfg_req xtree_shape_req x y z simobjdump kreac kf kb notes xtree_fg_req xtree_textfg_req x y z simobjdump kenz CoComplexInit CoComplex nComplexInit nComplex vol k1 k2 k3 \ keepconc usecomplex notes xtree_fg_req xtree_textfg_req link x y z simobjdump stim level1 width1 delay1 level2 width2 delay2 baselevel trig_time \ trig_mode notes xtree_fg_req xtree_textfg_req is_running x y z simobjdump xtab input output alloced step_mode stepsize notes editfunc \ xtree_fg_req xtree_textfg_req baselevel last_x last_y is_running x y z simobjdump kchan perm gmax Vm is_active use_nernst notes xtree_fg_req \ xtree_textfg_req x y z simobjdump uplink nmsgr nmodule nlink notes xtree_fg_req xtree_textfg_req \ nenz x y z simobjdump downlink nmsgr nmodule nlink notes xtree_fg_req xtree_textfg_req x \ y z simundump kpool /kinetics/X_prd 1 1 0 0 1 0 0 1 0 1 0 "" blue black kpool \ 2.2541 3.1157 0 simundump kpool /kinetics/X_sub 1 1 1 1 0.87628 1 1 1 0 1 4 "" blue black \ kpool -2.9303 3.097 0 simundump kreac /kinetics/degrade_X 1 0.16 0 "" white black -0.30738 3.8806 0 simundump kpool /kinetics/X 1 1 0 0 1 0 0 1 0 1 0 "" blue black kpool \ -0.51229 0.87687 0 simundump kenz /kinetics/X/X_enz 1 0 0 0 0 1 1 1 1 0 0 "" red blue "" \ -0.59426 1.9515 0 simundump kpool /kinetics/X_inactive 1 1 1 1 0 1 1 1 0 1 0 "" blue black \ kpool -4.0574 0.22388 0 simundump kpool /kinetics/Y 1 1 0 0 1 0 0 1 0 1 0 "" red black kpool -0.51229 \ -0.6903 0 simundump kenz /kinetics/Y/Y_enz 1 0 0 0 0 1 1 1 1 0 0 "" red red "" -0.47131 \ -2.0522 0 simundump kpool /kinetics/Y_sub 1 1 1 1 1 1 1 1 0 1 4 "" red black kpool \ 2.1926 -2.7612 0 simundump kpool /kinetics/Y_prd 1 20 0 0 20 0 0 20 0 1 0 "" red black kpool \ -2.9303 -2.8545 0 simundump kreac /kinetics/degrade_Y 1 0.16 0 "" white black -0.59426 -3.7687 \ 0 simundump kpool /kinetics/Y_inactive 1 1 1 1 0 1 1 1 0 1 0 "" red black kpool \ 3.738 0.018103 0 simundump kreac /kinetics/activate_X 1 1 1 "" white black -2.7638 1.6111 0 simundump kreac /kinetics/activate_Y 1 1 1 "" white black 2.0679 -1.3758 0 simundump xgraph /graphs/conc1 0 0 2000 0 1 0 simundump xgraph /graphs/conc2 0 0 2000 0 1 0 simundump xplot /graphs/conc1/X.Co 3 524288 \ "delete_plot.w ; edit_plot.D " blue 0.0064722 0 1 simundump xplot /graphs/conc1/Y_prd.Co 3 524288 \ "delete_plot.w ; edit_plot.D " red 0.2014 0 1 simundump xplot /graphs/conc2/Y.Co 3 524288 \ "delete_plot.w ; edit_plot.D " red 0.0064482 0 1 simundump xplot /graphs/conc2/X_prd.Co 3 524288 \ "delete_plot.w ; edit_plot.D " blue 0.20215 0 1 simundump xgraph /moregraphs/conc3 0 0 2000 0 1 0 simundump xgraph /moregraphs/conc4 0 0 2000 0 1 0 simundump xcoredraw /edit/draw 0 -4.8515 4.8515 -4.8515 4.8515 simundump xtree /edit/draw/tree 0 /kinetics/##[] \ "edit_elm.D ; drag_from_edit.w " auto 0.6 simundump xtext /file/notes 0 1 addmsg /kinetics/X/X_enz /kinetics/X_prd MM_PRD pA addmsg /kinetics/degrade_X /kinetics/X_prd REAC A B addmsg /kinetics/activate_Y /kinetics/X_prd REAC A B addmsg /kinetics/activate_Y /kinetics/X_prd REAC A B addmsg /kinetics/X/X_enz /kinetics/X_sub REAC sA B addmsg /kinetics/degrade_X /kinetics/X_sub REAC B A addmsg /kinetics/X_prd /kinetics/degrade_X SUBSTRATE n addmsg /kinetics/X_sub /kinetics/degrade_X PRODUCT n addmsg /kinetics/X/X_enz /kinetics/X REAC eA B addmsg /kinetics/activate_X /kinetics/X REAC B A addmsg /kinetics/X /kinetics/X/X_enz ENZYME n addmsg /kinetics/X_sub /kinetics/X/X_enz SUBSTRATE n addmsg /kinetics/activate_X /kinetics/X_inactive REAC A B addmsg /kinetics/Y/Y_enz /kinetics/Y REAC eA B addmsg /kinetics/activate_Y /kinetics/Y REAC B A addmsg /kinetics/Y /kinetics/Y/Y_enz ENZYME n addmsg /kinetics/Y_sub /kinetics/Y/Y_enz SUBSTRATE n addmsg /kinetics/Y/Y_enz /kinetics/Y_sub REAC sA B addmsg /kinetics/degrade_Y /kinetics/Y_sub REAC B A addmsg /kinetics/Y/Y_enz /kinetics/Y_prd MM_PRD pA addmsg /kinetics/degrade_Y /kinetics/Y_prd REAC A B addmsg /kinetics/activate_X /kinetics/Y_prd REAC A B addmsg /kinetics/activate_X /kinetics/Y_prd REAC A B addmsg /kinetics/Y_prd /kinetics/degrade_Y SUBSTRATE n addmsg /kinetics/Y_sub /kinetics/degrade_Y PRODUCT n addmsg /kinetics/activate_Y /kinetics/Y_inactive REAC A B addmsg /kinetics/X_inactive /kinetics/activate_X SUBSTRATE n addmsg /kinetics/X /kinetics/activate_X PRODUCT n addmsg /kinetics/Y_prd /kinetics/activate_X SUBSTRATE n addmsg /kinetics/Y_prd /kinetics/activate_X SUBSTRATE n addmsg /kinetics/Y_inactive /kinetics/activate_Y SUBSTRATE n addmsg /kinetics/X_prd /kinetics/activate_Y SUBSTRATE n addmsg /kinetics/X_prd /kinetics/activate_Y SUBSTRATE n addmsg /kinetics/Y /kinetics/activate_Y PRODUCT n addmsg /kinetics/X /graphs/conc1/X.Co PLOT Co *X.Co *blue addmsg /kinetics/Y_prd /graphs/conc1/Y_prd.Co PLOT Co *Y_prd.Co *red addmsg /kinetics/Y /graphs/conc2/Y.Co PLOT Co *Y.Co *red addmsg /kinetics/X_prd /graphs/conc2/X_prd.Co PLOT Co *X_prd.Co *blue enddump // End of dump call /edit/draw/tree RESET fix_transp_msgs reset