//genesis // kkit Version 10 flat dumpfile // Saved on Tue Oct 18 20:10:45 2005 include kkit {argv 1} FASTDT = 0.0001 SIMDT = 0.01 CONTROLDT = 5 PLOTDT = 1 MAXTIME = 100 TRANSIENT_TIME = 2 VARIABLE_DT_FLAG = 0 DEFAULT_VOL = 1.6667e-21 VERSION = 10.0 setfield /file/modpath value /home/dcfs/doi/genesis/Scripts/kkit10 kparms //genesis initdump -version 3 -ignoreorphans 1 simobjdump table input output alloced step_mode stepsize x y z simobjdump xtree path script namemode sizescale simobjdump xcoredraw xmin xmax ymin ymax simobjdump xtext editable simobjdump xgraph xmin xmax ymin ymax overlay simobjdump xplot pixflags script fg ysquish do_slope wy simobjdump group xtree_fg_req xtree_textfg_req plotfield expanded movealone \ link savename file version md5sum mod_save_flag x y z simobjdump kpool CoTotal CoInit Co n nInit nTotal nMin vol slave_enable notes \ xtree_fg_req xtree_textfg_req x y z simobjdump kreac kf kb notes xtree_fg_req xtree_textfg_req x y z simobjdump kenz CoComplexInit CoComplex nComplexInit nComplex vol k1 k2 k3 \ keepconc usecomplex notes xtree_fg_req xtree_textfg_req link x y z simobjdump stim level1 width1 delay1 level2 width2 delay2 baselevel trig_time \ trig_mode notes xtree_fg_req xtree_textfg_req is_running x y z simobjdump xtab input output alloced step_mode stepsize notes editfunc \ xtree_fg_req xtree_textfg_req baselevel last_x last_y is_running x y z simobjdump kchan perm gmax Vm is_active use_nernst notes xtree_fg_req \ xtree_textfg_req x y z simobjdump transport input output alloced step_mode stepsize dt delay clock \ kf xtree_fg_req xtree_textfg_req x y z simobjdump proto x y z simobjdump linkinfo xtree_fg_req xtree_textfg_req uplink downlink x y z simobjdump uplink xtree_fg_req xtree_textfg_req x y z simobjdump downlink xtree_fg_req xtree_textfg_req x y z simobjdump mirror notes xtree_fg_req x y z simundump kpool /kinetics/Dopamine 0 1 1 0.49995 0.49995 1 1 0 1 0 "" 62 \ black -4 3 0 simundump kpool /kinetics/DoR1 0 0.5 0.5 0.30056 0.30056 0.5 0.5 0 1 0 "" 24 \ black -2 4 0 simundump kpool /kinetics/DoR1_a 0 0 0 0.15027 0.15027 0 0 0 1 0 "" 28 black \ -2 -1 0 simundump kpool /kinetics/DoR1G_a 0 0 0 0.016376 0.016376 0 0 0 1 0 "" 30 \ black 2 -1 0 simundump kpool /kinetics/G2 0 1 1 0.1722 0.1722 1 1 0 1 0 "" blue black -9 1 \ 0 simundump kpool /kinetics/G1 0 0.7 0.7 0.10898 0.10898 0.7 0.7 0 1 0 "" 14 \ black 0 1 0 simundump kpool /kinetics/DoR2 0 1 1 0.5687 0.5687 1 1 0 1 0 "" 38 black -11 \ 4 0 simundump kpool /kinetics/DoR1_G 0 0 0 0.032756 0.032756 0 0 0 1 0 "" 26 \ black 2 4 0 simundump kpool /kinetics/DoR2_G 0 0 0 0.097928 0.097928 0 0 0 1 0 "" 40 \ black -7 4 0 simundump kpool /kinetics/DoR2_G_a 0 0 0 0.048959 0.048959 0 0 0 1 0 "" 44 \ black -7 -1 0 simundump kpool /kinetics/DoR2_a 0 0 0 0.28432 0.28432 0 0 0 1 0 "" 42 black \ -11 -1 0 simundump kreac /kinetics/a1_3 0 0.1 0.1 "" white black 0 4 0 simundump kreac /kinetics/a1_1 0 0.1 0.1 "" white black -2 2 0 simundump kreac /kinetics/a1_4 0 0.1 0.1 "" white black 0 -1 0 simundump kreac /kinetics/a1_2 0 0.1 0.1 "" white black 2 2 0 simundump kreac /kinetics/a2_3 0 0.1 0.1 "" white black -9 4 0 simundump kreac /kinetics/a2_1 0 0.1 0.1 "" white black -11 2 0 simundump kreac /kinetics/a2_2 0 0.1 0.1 "" white black -7 2 0 simundump kreac /kinetics/a2_4 0 0.1 0.1 "" white black -9 -1 0 simundump kpool /kinetics/bc2 0 0 0 0.68183 0.68183 0 0 0 1 0 "" blue black \ -11 -5 0 simundump kpool /kinetics/bc1 0 0 0 0.54249 0.54249 0 0 0 1 0 "" blue black \ -2 -5 0 simundump kpool /kinetics/AC 0 1 1 0.69812 0.69812 1 1 0 1 0 "" 0 black -4 -9 \ 0 simundump kenz /kinetics/AC/kenz 0 0 6.6472e-25 0 6.6472e-25 1 5 40 10 0 0 "" \ red 0 "" -4 -8 0 simundump kreac /kinetics/a1_5 0 0.1 0.1 "" white black 0 -3 0 simundump kreac /kinetics/a2_5 0 0.1 0.1 "" white black -9 -3 0 simundump kreac /kinetics/a2_6 0 0.1 0.1 "" white black -7 -3 0 simundump kpool /kinetics/GDP2 0 0 0 0.25255 0.25255 0 0 0 1 0 "" blue black \ -7 -5 0 simundump kreac /kinetics/a2_7 0 0.1 0.1 "" white black -7 -7 0 simundump kreac /kinetics/a2_8 0 0.1 0.1 "" white black -11 -3 0 simundump kpool /kinetics/GDP1 0 0 0 0.20089 0.20089 0 0 0 1 0 "" blue black \ 2 -5 0 simundump kreac /kinetics/a1_6 0 0.1 0.1 "" white black 2 -3 0 simundump kreac /kinetics/a1_7 0 0.1 0.1 "" white black 2 -7 0 simundump kreac /kinetics/a1_8 0 0.1 0.1 "" white black -2 -3 0 simundump kpool /kinetics/GTPs 0 0 0 0.20089 0.20089 0 0 0 1 0 "" 48 black 0 \ -7 0 simundump kpool /kinetics/GTPi 0 0 0 0.25255 0.25255 0 0 0 1 0 "" 53 black -9 \ -7 0 simundump kpool /kinetics/Gs_AC 0 0 0 0.14025 0.14025 0 0 0 1 0 "" 0 black -1 \ -12 0 simundump kenz /kinetics/Gs_AC/kenz 0 0 6.6482e-26 0 6.6482e-26 1 4.5 72 18 0 \ 0 "" red 0 "" -1 -11 0 simundump kpool /kinetics/ATP 0 1 1 9.4304e-24 9.4304e-24 1 1 0 1 0 "" 61 \ black -6 -14 0 simundump kpool /kinetics/cAMP 0 0 0 1.0376 1.0376 0 0 0 1 0 "" 46 black -3 \ -14 0 simundump kpool /kinetics/Gi_AC 0 0 0 0.17631 0.17631 0 0 0 1 0 "" 0 black -8 \ -12 0 simundump kenz /kinetics/Gi_AC/kenz 0 0 7.8608e-24 0 7.8608e-24 1 0.1 0.4 0.1 \ 0 0 "" red 0 "" -8 -11 0 simundump kreac /kinetics/AC_GTPi 0 0.1 0.1 "" white black -8 -9 0 simundump kreac /kinetics/AC_GTPs 0 0.1 0.1 "" white black -1 -9 0 simundump kpool /kinetics/PDE 0 0 0 0 0 0 0 0 1 0 "" 1 black 0 -16 0 simundump kenz /kinetics/PDE/kenz 0 0 0 0 0 1 0.1 0.4 0.1 0 0 "" red 1 "" 0 \ -15 0 simundump kpool /kinetics/5AMP 0 0 0 0 0 0 0 0 1 0 "" 41 black -3 -18 0 simundump xgraph /graphs/conc1 0 0 100 0 1 0 simundump xgraph /graphs/conc2 0 0 100 0 1 0 simundump xplot /graphs/conc1/ATP.Co 3 524288 \ "delete_plot.w ; edit_plot.D " 61 0 0 1 simundump xplot /graphs/conc1/cAMP.Co 3 524288 \ "delete_plot.w ; edit_plot.D " 46 0 0 1 simundump xplot /graphs/conc2/Dopamine.Co 3 524288 \ "delete_plot.w ; edit_plot.D " 62 0 0 1 simundump xplot /graphs/conc2/GTP1.Co 3 524288 \ "delete_plot.w ; edit_plot.D " 48 0 0 1 simundump xplot /graphs/conc2/GTP2.Co 3 524288 \ "delete_plot.w ; edit_plot.D " 53 0 0 1 simundump xgraph /moregraphs/conc3 0 0 100 0 1 0 simundump xgraph /moregraphs/conc4 0 0 100 0 1 0 simundump xcoredraw /edit/draw 0 -13 4 -20 6 simundump xtree /edit/draw/tree 0 \ /kinetics/#[],/kinetics/#[]/#[],/kinetics/#[]/#[]/#[][TYPE!=proto],/kinetics/#[]/#[]/#[][TYPE!=linkinfo]/##[] \ "edit_elm.D ; drag_from_edit.w " auto 0.6 simundump xtext /file/notes 0 1 addmsg /kinetics/a1_1 /kinetics/Dopamine REAC A B addmsg /kinetics/a1_2 /kinetics/Dopamine REAC A B addmsg /kinetics/a2_1 /kinetics/Dopamine REAC A B addmsg /kinetics/a2_2 /kinetics/Dopamine REAC A B addmsg /kinetics/a1_1 /kinetics/DoR1 REAC A B addmsg /kinetics/a1_3 /kinetics/DoR1 REAC A B addmsg /kinetics/a1_1 /kinetics/DoR1_a REAC B A addmsg /kinetics/a1_4 /kinetics/DoR1_a REAC A B addmsg /kinetics/a1_5 /kinetics/DoR1_a REAC B A addmsg /kinetics/a1_2 /kinetics/DoR1G_a REAC B A addmsg /kinetics/a1_4 /kinetics/DoR1G_a REAC B A addmsg /kinetics/a1_5 /kinetics/DoR1G_a REAC A B addmsg /kinetics/a2_3 /kinetics/G2 REAC A B addmsg /kinetics/a2_4 /kinetics/G2 REAC A B addmsg /kinetics/a2_6 /kinetics/G2 REAC A B addmsg /kinetics/a2_8 /kinetics/G2 REAC B A addmsg /kinetics/a1_3 /kinetics/G1 REAC A B addmsg /kinetics/a1_4 /kinetics/G1 REAC A B addmsg /kinetics/a1_6 /kinetics/G1 REAC A B addmsg /kinetics/a1_8 /kinetics/G1 REAC B A addmsg /kinetics/a2_3 /kinetics/DoR2 REAC A B addmsg /kinetics/a2_1 /kinetics/DoR2 REAC A B addmsg /kinetics/a1_3 /kinetics/DoR1_G REAC B A addmsg /kinetics/a1_2 /kinetics/DoR1_G REAC A B addmsg /kinetics/a2_3 /kinetics/DoR2_G REAC B A addmsg /kinetics/a2_2 /kinetics/DoR2_G REAC A B addmsg /kinetics/a2_2 /kinetics/DoR2_G_a REAC B A addmsg /kinetics/a2_4 /kinetics/DoR2_G_a REAC B A addmsg /kinetics/a2_5 /kinetics/DoR2_G_a REAC A B addmsg /kinetics/a2_1 /kinetics/DoR2_a REAC B A addmsg /kinetics/a2_4 /kinetics/DoR2_a REAC A B addmsg /kinetics/a2_5 /kinetics/DoR2_a REAC B A addmsg /kinetics/DoR1 /kinetics/a1_3 SUBSTRATE n addmsg /kinetics/G1 /kinetics/a1_3 SUBSTRATE n addmsg /kinetics/DoR1_G /kinetics/a1_3 PRODUCT n addmsg /kinetics/DoR1 /kinetics/a1_1 SUBSTRATE n addmsg /kinetics/Dopamine /kinetics/a1_1 SUBSTRATE n addmsg /kinetics/DoR1_a /kinetics/a1_1 PRODUCT n addmsg /kinetics/G1 /kinetics/a1_4 SUBSTRATE n addmsg /kinetics/DoR1_a /kinetics/a1_4 SUBSTRATE n addmsg /kinetics/DoR1G_a /kinetics/a1_4 PRODUCT n addmsg /kinetics/DoR1_G /kinetics/a1_2 SUBSTRATE n addmsg /kinetics/Dopamine /kinetics/a1_2 SUBSTRATE n addmsg /kinetics/DoR1G_a /kinetics/a1_2 PRODUCT n addmsg /kinetics/DoR2 /kinetics/a2_3 SUBSTRATE n addmsg /kinetics/DoR2_G /kinetics/a2_3 PRODUCT n addmsg /kinetics/G2 /kinetics/a2_3 SUBSTRATE n addmsg /kinetics/DoR2 /kinetics/a2_1 SUBSTRATE n addmsg /kinetics/DoR2_a /kinetics/a2_1 PRODUCT n addmsg /kinetics/Dopamine /kinetics/a2_1 SUBSTRATE n addmsg /kinetics/DoR2_G /kinetics/a2_2 SUBSTRATE n addmsg /kinetics/DoR2_G_a /kinetics/a2_2 PRODUCT n addmsg /kinetics/Dopamine /kinetics/a2_2 SUBSTRATE n addmsg /kinetics/DoR2_a /kinetics/a2_4 SUBSTRATE n addmsg /kinetics/DoR2_G_a /kinetics/a2_4 PRODUCT n addmsg /kinetics/G2 /kinetics/a2_4 SUBSTRATE n addmsg /kinetics/a2_5 /kinetics/bc2 REAC B A addmsg /kinetics/a2_6 /kinetics/bc2 REAC B A addmsg /kinetics/a2_8 /kinetics/bc2 REAC A B addmsg /kinetics/a1_5 /kinetics/bc1 REAC B A addmsg /kinetics/a1_6 /kinetics/bc1 REAC B A addmsg /kinetics/a1_8 /kinetics/bc1 REAC A B addmsg /kinetics/AC_GTPs /kinetics/AC REAC A B addmsg /kinetics/AC_GTPi /kinetics/AC REAC A B addmsg /kinetics/AC/kenz /kinetics/AC REAC eA B addmsg /kinetics/AC /kinetics/AC/kenz ENZYME n addmsg /kinetics/ATP /kinetics/AC/kenz SUBSTRATE n addmsg /kinetics/DoR1G_a /kinetics/a1_5 SUBSTRATE n addmsg /kinetics/bc1 /kinetics/a1_5 PRODUCT n addmsg /kinetics/GTPs /kinetics/a1_5 PRODUCT n addmsg /kinetics/DoR1_a /kinetics/a1_5 PRODUCT n addmsg /kinetics/DoR2_G_a /kinetics/a2_5 SUBSTRATE n addmsg /kinetics/DoR2_a /kinetics/a2_5 PRODUCT n addmsg /kinetics/bc2 /kinetics/a2_5 PRODUCT n addmsg /kinetics/GTPi /kinetics/a2_5 PRODUCT n addmsg /kinetics/G2 /kinetics/a2_6 SUBSTRATE n addmsg /kinetics/GTPi /kinetics/a2_6 PRODUCT n addmsg /kinetics/bc2 /kinetics/a2_6 PRODUCT n addmsg /kinetics/a2_7 /kinetics/GDP2 REAC B A addmsg /kinetics/a2_8 /kinetics/GDP2 REAC A B addmsg /kinetics/GTPi /kinetics/a2_7 SUBSTRATE n addmsg /kinetics/GDP2 /kinetics/a2_7 PRODUCT n addmsg /kinetics/GDP2 /kinetics/a2_8 SUBSTRATE n addmsg /kinetics/bc2 /kinetics/a2_8 SUBSTRATE n addmsg /kinetics/G2 /kinetics/a2_8 PRODUCT n addmsg /kinetics/a1_7 /kinetics/GDP1 REAC B A addmsg /kinetics/a1_8 /kinetics/GDP1 REAC A B addmsg /kinetics/G1 /kinetics/a1_6 SUBSTRATE n addmsg /kinetics/GTPs /kinetics/a1_6 PRODUCT n addmsg /kinetics/bc1 /kinetics/a1_6 PRODUCT n addmsg /kinetics/GTPs /kinetics/a1_7 SUBSTRATE n addmsg /kinetics/GDP1 /kinetics/a1_7 PRODUCT n addmsg /kinetics/bc1 /kinetics/a1_8 SUBSTRATE n addmsg /kinetics/GDP1 /kinetics/a1_8 SUBSTRATE n addmsg /kinetics/G1 /kinetics/a1_8 PRODUCT n addmsg /kinetics/a1_5 /kinetics/GTPs REAC B A addmsg /kinetics/a1_6 /kinetics/GTPs REAC B A addmsg /kinetics/a1_7 /kinetics/GTPs REAC A B addmsg /kinetics/AC_GTPs /kinetics/GTPs REAC A B addmsg /kinetics/a2_5 /kinetics/GTPi REAC B A addmsg /kinetics/a2_6 /kinetics/GTPi REAC B A addmsg /kinetics/a2_7 /kinetics/GTPi REAC A B addmsg /kinetics/AC_GTPi /kinetics/GTPi REAC A B addmsg /kinetics/AC_GTPs /kinetics/Gs_AC REAC B A addmsg /kinetics/Gs_AC/kenz /kinetics/Gs_AC REAC eA B addmsg /kinetics/Gs_AC /kinetics/Gs_AC/kenz ENZYME n addmsg /kinetics/ATP /kinetics/Gs_AC/kenz SUBSTRATE n addmsg /kinetics/Gs_AC/kenz /kinetics/ATP REAC sA B addmsg /kinetics/Gi_AC/kenz /kinetics/ATP REAC sA B addmsg /kinetics/AC/kenz /kinetics/ATP REAC sA B addmsg /kinetics/Gs_AC/kenz /kinetics/cAMP MM_PRD pA addmsg /kinetics/Gi_AC/kenz /kinetics/cAMP MM_PRD pA addmsg /kinetics/AC/kenz /kinetics/cAMP MM_PRD pA addmsg /kinetics/PDE/kenz /kinetics/cAMP REAC sA B addmsg /kinetics/AC_GTPi /kinetics/Gi_AC REAC B A addmsg /kinetics/Gi_AC/kenz /kinetics/Gi_AC REAC eA B addmsg /kinetics/Gi_AC /kinetics/Gi_AC/kenz ENZYME n addmsg /kinetics/ATP /kinetics/Gi_AC/kenz SUBSTRATE n addmsg /kinetics/GTPi /kinetics/AC_GTPi SUBSTRATE n addmsg /kinetics/AC /kinetics/AC_GTPi SUBSTRATE n addmsg /kinetics/Gi_AC /kinetics/AC_GTPi PRODUCT n addmsg /kinetics/GTPs /kinetics/AC_GTPs SUBSTRATE n addmsg /kinetics/AC /kinetics/AC_GTPs SUBSTRATE n addmsg /kinetics/Gs_AC /kinetics/AC_GTPs PRODUCT n addmsg /kinetics/PDE/kenz /kinetics/PDE REAC eA B addmsg /kinetics/PDE /kinetics/PDE/kenz ENZYME n addmsg /kinetics/cAMP /kinetics/PDE/kenz SUBSTRATE n addmsg /kinetics/PDE/kenz /kinetics/5AMP MM_PRD pA addmsg /kinetics/ATP /graphs/conc1/ATP.Co PLOT Co *ATP.Co *61 addmsg /kinetics/cAMP /graphs/conc1/cAMP.Co PLOT Co *cAMP.Co *46 addmsg /kinetics/Dopamine /graphs/conc2/Dopamine.Co PLOT Co *Dopamine.Co *62 addmsg /kinetics/GTPs /graphs/conc2/GTP1.Co PLOT Co *GTP1.Co *48 addmsg /kinetics/GTPi /graphs/conc2/GTP2.Co PLOT Co *GTP2.Co *53 enddump // End of dump complete_loading